History¶
0.18.0 (2023-05-12)¶
- Fix input conversion if input has no label by @mvdbeek in https://github.com/galaxyproject/gxformat2/pull/89
0.17.0 (2023-01-06)¶
- Enable “when” for workflow steps by @mr-c in https://github.com/galaxyproject/gxformat2/pull/74
- When fixes by @mvdbeek in https://github.com/galaxyproject/gxformat2/pull/86
0.16.0 (2022-09-20)¶
- Add dev
when
on steps to backend (don’t expose in schema yet). by @jmchilton in https://github.com/galaxyproject/gxformat2/pull/48 - Update project plumbing to allow dev release. by @jmchilton in https://github.com/galaxyproject/gxformat2/pull/49
- Drop support for Python 3.5, add 3.9 by @nsoranzo in https://github.com/galaxyproject/gxformat2/pull/52
- Relicense under the MIT license by @nsoranzo in https://github.com/galaxyproject/gxformat2/pull/58
- Format2: Add label attribute to WorkflowInputParameter and WorkflowOutputParameter by @nsoranzo in https://github.com/galaxyproject/gxformat2/pull/56
- Misc fixes and refactorings by @nsoranzo in https://github.com/galaxyproject/gxformat2/pull/55
- Convert Format2 workflow label to native name by @nsoranzo in https://github.com/galaxyproject/gxformat2/pull/54
- test_abstract_export: use different names for the different outputs by @simleo in https://github.com/galaxyproject/gxformat2/pull/57
- Fix 2 typos by @nsoranzo in https://github.com/galaxyproject/gxformat2/pull/62
- Propagate doc field to abstract CWL format by @nsoranzo in https://github.com/galaxyproject/gxformat2/pull/65
- Linting fixes by @mvdbeek in https://github.com/galaxyproject/gxformat2/pull/64
- Maintain collection_type if present by @mvdbeek in https://github.com/galaxyproject/gxformat2/pull/68
- Fix schema doc build by @nsoranzo in https://github.com/galaxyproject/gxformat2/pull/69
- Lint and deprecation fixes by @nsoranzo in https://github.com/galaxyproject/gxformat2/pull/70
- Run java codegenerator by @mvdbeek in https://github.com/galaxyproject/gxformat2/pull/71
- Run maven tests on pull_request by @mvdbeek in https://github.com/galaxyproject/gxformat2/pull/72
- fix schema-salad pycodegen by @mr-c in https://github.com/galaxyproject/gxformat2/pull/76
- Add workflow default file support by @mvdbeek in https://github.com/galaxyproject/gxformat2/pull/79
- Add typescript implementation by @mr-c in https://github.com/galaxyproject/gxformat2/pull/75
- Fix cytoscape HTML exports from dist package. by @jmchilton in https://github.com/galaxyproject/gxformat2/pull/82
- Add missing elements to schema, fix change_datatype conversion, CSS by @mvdbeek in https://github.com/galaxyproject/gxformat2/pull/83
- Support lists as data inputs by @mvdbeek in https://github.com/galaxyproject/gxformat2/pull/84
0.15.0 (2020-08-12)¶
- Lint types of default values.
- Fix bugs in schema related to differing type names between Galaxy and CWL.
- Generate cwl v1.2 instead of cwl v1.2.0-dev5 release now that it has been released.
- More testing of linting and CWL 1.2 export.
0.14.0 (2020-08-11)¶
- Bug fix where native export had explicit outputs declaration still in it (wouldn’t break anything, but was deceptive).
- Fixes for experimental CWL 1.2 abstract export.
- Improve script structures and documentation.
- Improve code structure - add more types, make more things immutable, mention mutability in docstrings.
0.13.1 (2020-08-03)¶
- Improve package structure - publish fixed sphinx docs, fix readme badges, add mypy typing support.
0.13.0 (2020-07-30)¶
- Add experimental export to CWL 1.2 using new abstract Operation classes.
0.12.0 (2020-07-27)¶
- Drop support for Python 2 - to support next bullet.
- Update schema parser for recent changes to schema salad.
0.11.4 (2020-07-27)¶
- Added abstraction for uniform access to workflow outputs across formats.
0.11.3 (2020-07-23)¶
- Bug fixes for exporting newer input concepts from native to Format 2.
- Added abstraction for uniform access to workflow inputs across formats.
0.11.2 (2020-07-22)¶
- Rework cytoscape and helpers for reuse from Planemo.
- Rev markdown validator for and from latest Galaxy changes.
0.11.1 (2020-02-25)¶
- Bug fix for gxwf-lint invocation from setup.py installed script.
0.11.0 (2020-02-25)¶
- Validate Galaxy Markdown in workflow reports as part of linting.
- Improved null handling in native ga workflow linting.
- Enhancements to workflow linting from Python. Lint for lack of documentation, tools using the test toolshed, and implement special linting for training material workflows to ensure a tag matches the workflow topic.
- Add gxwf-viz script that produces a cytoscape visualization of a workflow.
0.10.1 (2019-12-07)¶
- Bug fix to handle outputs without labels in Format 2 - they don’t validate per se but they are important for testing in the Galaxy framework.
0.10.0 (2019-12-06)¶
- Implement scheam, validation, linting (for Format 2 and .ga).
- Handle new reports field in Galaxy 19.09 workflows.
- Numerous fixes for conversiion to and from native workflows.
- Numerous new test cases.
- Implement Java project for valiating and linting both kinds of workflows.
0.9.0 (2019-07-08)¶
- Implement default values in gxformat2.
0.8.4 (2019-06-24)¶
- Fix output IDs of 0.
0.8.3 (2019-05-23)¶
- Implement set_columns PJA.
0.8.2 (2019-03-16)¶
- Allow another API return option for experimental tool creation API.
0.8.1 (2019-03-11)¶
- Implement change datatype PJA.
0.8.0 (2018-11-01)¶
- Implement experimental CWL-style step defaults (see Galaxy PR #6850).
0.7.1 (2018-10-09)¶
- Various small fixes for changes in 0.7.1.
0.7.0 (2018-10-08)¶
- Add some basic test cases.
- Allow ID-map style listing of steps.
- Ordered load (in addition to existing dump functionality) or ordering of steps in ID-map style variant works.
- Allow CWL-style $graph defs that can define multiple workflows in a single file.
- Initial work on de-duplicating subworkflow definitions on import.
- Fix position handling while exporting workflow.
0.6.1 (2018-10-01)¶
- Fix export of non-data parameters and implicit workflow connections.
0.6.0 (2018-10-01)¶
- Various fixes, allow id map style workflow input definitions.
0.5.0 (2018-10-01)¶
- More fixes for PJA, add the
doc
keyword to format 2 workflows to match CWL workflows. Map to and from native Galaxy workflows as annotations.
0.4.0 (2018-10-01)¶
- Fixes for exporting PJA when exporting workflows from native .ga to format 2.
0.3.2 (2018-10-01)¶
- Fixes for exporting workflow outputs from native .ga to format 2, support for modern map style output definitions like CWL 1.0.
0.3.1 (2018-10-01)¶
- Fixes for exporting subworkflows from native .ga to format 2.
0.3.0 (2018-09-30)¶
- More cwl style inputs, initial work on conversion from native workflows, various small fixes and tweaks.
0.2.0 (2018-02-21)¶
- Bring in latest Galaxy updates - Python 3 fixes, safe YAML usage, and more PJA implemented.
0.1.1 (2016-08-15)¶
- Fix one Python 3 incompatibility.
0.1.0 (2016-05-02)¶
- Initial version - code from Galaxy’s test framework with changes based on planemo testing.