gxformat2.mermaid package

Module contents

Mermaid flowchart visualization for Galaxy workflows.

gxformat2.mermaid.main(argv=None)

Entry point for generating Mermaid diagrams of Galaxy workflows.

gxformat2.mermaid.to_mermaid(workflow_path: str, output_path=None, *, comments: bool = False)

Produce mermaid output for the supplied workflow path.

gxformat2.mermaid.workflow_to_mermaid(workflow: dict[str, Any] | str | Path | GalaxyWorkflow | NormalizedFormat2, *, comments: bool = False) → str

Convert a Galaxy workflow to a Mermaid flowchart string.

Accepts anything ensure_format2() supports, plus an already normalized NormalizedFormat2 instance.

When comments is True, FrameComment objects are rendered as Mermaid subgraphs that group their contained steps.