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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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V
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Y
A
ArraySchema (class in gxformat2.schema.v19_09)
attrs (gxformat2.schema.v19_09.ArraySchema attribute)
(gxformat2.schema.v19_09.EnumSchema attribute)
(gxformat2.schema.v19_09.GalaxyWorkflow attribute)
(gxformat2.schema.v19_09.RecordField attribute)
(gxformat2.schema.v19_09.RecordSchema attribute)
(gxformat2.schema.v19_09.Report attribute)
(gxformat2.schema.v19_09.StepPosition attribute)
(gxformat2.schema.v19_09.ToolShedRepository attribute)
(gxformat2.schema.v19_09.WorkflowInputParameter attribute)
(gxformat2.schema.v19_09.WorkflowOutputParameter attribute)
(gxformat2.schema.v19_09.WorkflowStep attribute)
(gxformat2.schema.v19_09.WorkflowStepInput attribute)
(gxformat2.schema.v19_09.WorkflowStepOutput attribute)
B
BioBlendImporterGalaxyInterface (class in gxformat2.interface)
C
convert_and_import_workflow() (in module gxformat2)
(in module gxformat2.main)
convert_dict_to_id_list_if_needed() (in module gxformat2.model)
count (gxformat2.normalize.Inputs attribute)
D
Documented (class in gxformat2.schema.v19_09)
E
ensure_step_position() (in module gxformat2.model)
EnumSchema (class in gxformat2.schema.v19_09)
error() (gxformat2.linting.LintContext method)
expand_url() (in module gxformat2.schema.v19_09)
F
file_uri() (in module gxformat2.schema.v19_09)
from_dict() (in module gxformat2.abstract)
from_galaxy_native() (in module gxformat2)
(in module gxformat2.export)
fromDoc() (gxformat2.schema.v19_09.ArraySchema class method)
(gxformat2.schema.v19_09.EnumSchema class method)
(gxformat2.schema.v19_09.GalaxyWorkflow class method)
(gxformat2.schema.v19_09.RecordField class method)
(gxformat2.schema.v19_09.RecordSchema class method)
(gxformat2.schema.v19_09.Report class method)
(gxformat2.schema.v19_09.Saveable class method)
(gxformat2.schema.v19_09.StepPosition class method)
(gxformat2.schema.v19_09.ToolShedRepository class method)
(gxformat2.schema.v19_09.WorkflowInputParameter class method)
(gxformat2.schema.v19_09.WorkflowOutputParameter class method)
(gxformat2.schema.v19_09.WorkflowStep class method)
(gxformat2.schema.v19_09.WorkflowStepInput class method)
(gxformat2.schema.v19_09.WorkflowStepOutput class method)
G
GalaxyWorkflow (class in gxformat2.schema.v19_09)
graph (gxformat2.schema.v19_09.LoadingOptions attribute)
gxformat2 (module)
gxformat2.abstract (module)
gxformat2.converter (module)
gxformat2.cytoscape (module)
gxformat2.export (module)
gxformat2.interface (module)
gxformat2.lint (module)
gxformat2.linting (module)
gxformat2.main (module)
gxformat2.markdown_parse (module)
gxformat2.model (module)
gxformat2.normalize (module)
gxformat2.schema (module)
gxformat2.schema.v19_09 (module)
gxformat2.yaml (module)
H
HasStepErrors (class in gxformat2.schema.v19_09)
HasStepPosition (class in gxformat2.schema.v19_09)
HasUUID (class in gxformat2.schema.v19_09)
I
Identified (class in gxformat2.schema.v19_09)
import_tool() (gxformat2.ImporterGalaxyInterface method)
(gxformat2.interface.BioBlendImporterGalaxyInterface method)
(gxformat2.interface.ImporterGalaxyInterface method)
import_workflow() (gxformat2.ImporterGalaxyInterface method)
(gxformat2.interface.BioBlendImporterGalaxyInterface method)
(gxformat2.interface.ImporterGalaxyInterface method)
ImporterGalaxyInterface (class in gxformat2)
(class in gxformat2.interface)
ImportOptions (class in gxformat2)
InputParameter (class in gxformat2.schema.v19_09)
Inputs (class in gxformat2.normalize)
inputs_as_native_steps() (in module gxformat2.model)
inputs_as_normalized_steps() (in module gxformat2.model)
inputs_normalized() (in module gxformat2.normalize)
is_an_input() (gxformat2.normalize.Inputs method)
L
Labeled (class in gxformat2.schema.v19_09)
lint_format2() (in module gxformat2.lint)
lint_ga() (in module gxformat2.lint)
LintContext (class in gxformat2.linting)
load_document() (in module gxformat2.schema.v19_09)
load_document_by_string() (in module gxformat2.schema.v19_09)
load_document_by_yaml() (in module gxformat2.schema.v19_09)
load_document_with_metadata() (in module gxformat2.schema.v19_09)
load_field() (in module gxformat2.schema.v19_09)
LoadingOptions (class in gxformat2.schema.v19_09)
M
main() (in module gxformat2.abstract)
(in module gxformat2.converter)
(in module gxformat2.cytoscape)
(in module gxformat2.export)
(in module gxformat2.lint)
N
native_input_to_format2_type() (in module gxformat2.model)
NormalizedWorkflow (class in gxformat2.normalize)
O
ordered_dump() (in module gxformat2.yaml)
ordered_dump_to_path() (in module gxformat2.yaml)
ordered_load() (in module gxformat2.yaml)
ordered_load_path() (in module gxformat2.yaml)
OutputParameter (class in gxformat2.schema.v19_09)
outputs_as_list() (in module gxformat2.model)
outputs_normalized() (in module gxformat2.normalize)
P
Parameter (class in gxformat2.schema.v19_09)
parser_info() (in module gxformat2.schema.v19_09)
prefix_url() (in module gxformat2.schema.v19_09)
print_messages() (gxformat2.linting.LintContext method)
Process (class in gxformat2.schema.v19_09)
prune_position() (in module gxformat2.model)
python_to_workflow() (in module gxformat2)
(in module gxformat2.converter)
R
RecordField (class in gxformat2.schema.v19_09)
RecordSchema (class in gxformat2.schema.v19_09)
ReferencesTool (class in gxformat2.schema.v19_09)
Report (class in gxformat2.schema.v19_09)
S
save() (gxformat2.schema.v19_09.ArraySchema method)
(gxformat2.schema.v19_09.EnumSchema method)
(gxformat2.schema.v19_09.GalaxyWorkflow method)
(gxformat2.schema.v19_09.RecordField method)
(gxformat2.schema.v19_09.RecordSchema method)
(gxformat2.schema.v19_09.Report method)
(gxformat2.schema.v19_09.Saveable method)
(gxformat2.schema.v19_09.StepPosition method)
(gxformat2.schema.v19_09.ToolShedRepository method)
(gxformat2.schema.v19_09.WorkflowInputParameter method)
(gxformat2.schema.v19_09.WorkflowOutputParameter method)
(gxformat2.schema.v19_09.WorkflowStep method)
(gxformat2.schema.v19_09.WorkflowStepInput method)
(gxformat2.schema.v19_09.WorkflowStepOutput method)
(in module gxformat2.schema.v19_09)
save_relative_uri() (in module gxformat2.schema.v19_09)
save_with_metadata() (in module gxformat2.schema.v19_09)
Saveable (class in gxformat2.schema.v19_09)
shortname() (in module gxformat2.schema.v19_09)
Sink (class in gxformat2.schema.v19_09)
StepPosition (class in gxformat2.schema.v19_09)
steps_normalized() (in module gxformat2.normalize)
T
to_cytoscape() (in module gxformat2.cytoscape)
ToolShedRepository (class in gxformat2.schema.v19_09)
V
validate_galaxy_markdown() (in module gxformat2.markdown_parse)
W
walk_id_list_or_dict() (in module gxformat2.normalize)
warn() (gxformat2.linting.LintContext method)
with_step_ids() (in module gxformat2.model)
WorkflowInputParameter (class in gxformat2.schema.v19_09)
WorkflowOutputParameter (class in gxformat2.schema.v19_09)
WorkflowStep (class in gxformat2.schema.v19_09)
WorkflowStepInput (class in gxformat2.schema.v19_09)
WorkflowStepOutput (class in gxformat2.schema.v19_09)
Y
yaml_to_workflow() (in module gxformat2.converter)
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